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Pulmonary Toolkit

  • Pulmonary Toolkit

Overview

  • Introduction
  • Getting started
  • Ways of using the Pulmonary Toolkit (PTK)
  • PDF tutorial guides
  • Running PTK without Matlab

Installing PTK

  • Installing the Pulmonary Toolkit
    • Installing the Pulmonary Toolkit for use with Matlab
    • Installing the Pulmonary Toolkit without
  • Running the Pulmonary Toolkit
  • Updating the Pulmonary Toolkit

Importing and visualising data

  • Loading data
  • Supported data and imaging formats

Visualising data

  • Visualising data
  • Keyboard and mouse shortcuts

Lung and lobe analysis

  • Tutorial: Lobar analysis of CT data
  • How to perform and correct lobe Segmentations
  • Fixing lobe segmentation failures

Features

  • Manual segmentations
  • Parameters
  • Markers
  • Linked datasets
  • PTKViewer
  • MIV

Maintenance

  • Deleting data in PTK
  • Recovering disk space
  • Complete reset

Plugins

  • Introduction to PTK Plugins
  • Running plugins
  • How to develop your own Plugins
  • GUI Plugins

Developer documentation

  • Edited Results for manual and semi-automated correction
  • Coding standards
  • PTK internal directories and caches
  • Unit tests
  • Profiling
  • MEX files
  • Error and Progress Reporting
  • Scripts
  • Building user interfaces using PTK classes
  • Octave compatibility

About PTK datatypes

  • Contexts
  • PTKImage
  • Metrics
  • PTKResultsTable

Scripting

  • Running PTK from the command line

Legacy documentation

  • Release notes v0.7
  • Release notes v0.8
  • HOW TO MIGRATE YOUR PTK CODEBASE FROM GOOGLE CODE

Additional resources

  • How to cite PTK
  • External Depenencies
  • Sample Data
  • Other software for medical imaging analysis
  • Additional help topics
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Pulmonary ToolkitΒΆ

Online Documentation for the TD Pulmonary Toolkit

Overview

  • Introduction
  • Getting started
  • Ways of using the Pulmonary Toolkit (PTK)
  • PDF tutorial guides
  • Running PTK without Matlab

Installing PTK

  • Installing the Pulmonary Toolkit
  • Running the Pulmonary Toolkit
  • Updating the Pulmonary Toolkit

Importing and visualising data

  • Loading data
  • Supported data and imaging formats

Visualising data

  • Visualising data
  • Keyboard and mouse shortcuts

Lung and lobe analysis

  • Tutorial: Lobar analysis of CT data
  • How to perform and correct lobe Segmentations
  • Fixing lobe segmentation failures

Features

  • Manual segmentations
  • Parameters
  • Markers
  • Linked datasets
  • PTKViewer
  • Keyboard and mouse shortcuts
  • MIV

Maintenance

  • Deleting data in PTK
  • Recovering disk space
  • Complete reset

Plugins

  • Introduction to PTK Plugins
  • Running plugins
  • How to develop your own Plugins
  • GUI Plugins

Developer documentation

  • Edited Results for manual and semi-automated correction
  • Coding standards
  • PTK internal directories and caches
  • Unit tests
  • Profiling
  • MEX files
  • Error and Progress Reporting
  • Scripts
  • Building user interfaces using PTK classes
  • Octave compatibility

About PTK datatypes

  • Contexts
  • PTKImage
  • Metrics
  • PTKResultsTable

Scripting

  • Running PTK from the command line

Legacy documentation

  • Release notes v0.7
  • Release notes v0.8
  • HOW TO MIGRATE YOUR PTK CODEBASE FROM GOOGLE CODE

Additional resources

  • How to cite PTK
  • External Depenencies
  • Sample Data
  • Other software for medical imaging analysis
  • Additional help topics
Introduction

By Tom Doel
© Copyright 2020.